RNA modifications and cancer

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Unimeth: A unified transformer framework for accurate DNA methylation detection from nanopore reads
bioRxiv · 22 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2025.12.05.692231
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TGS1 mediates mRNA 5'-cap trimethylation to promote oxidative phosphorylation in acute myeloid leukaemia.
bioRxiv · 19 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.03.18.712389
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Rare tRNAs with A-starting anticodons are functional and show codon-box dependent fitness effects
bioRxiv · 18 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.05.15.725136
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Homology-aware cross-validation strategies for generalization assessment in RNA secondary structure prediction
bioRxiv · 16 Oct 2026 · Preprint
Homology-aware cross-validation strategies reveal that current RNA secondary structure prediction methods' apparent superiority is an artifact of splitting strategies.
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https://jclub.com.au/a/10.64898/2026.06.28.735057
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Analysis of ribosomes from the Wild-type and FMR1 knockout human embryonic stem cells
bioRxiv · 14 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2024.11.18.624098
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Calibrated analysis framework for nanopore direct RNA sequencing uncovers cell-specific m6A proportions at conserved sites
bioRxiv · 14 Oct 2026 · Preprint
Calibrated nanopore DRS analysis reveals cell-specific m6A proportions at conserved sites, with Dorado predictions capturing increasing GLORI site proportions at high m6A/A levels.
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https://jclub.com.au/a/10.1101/2025.11.02.686099
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A genome-wide analysis identifies DIDO3 binding at active chromatin and topological boundaries in mouse stem cells
bioRxiv · 14 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2021.09.27.462041
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PUS7 pseudouridylation of 7SK orchestrates human somatic cell reprogramming into iPS cells.
Nature Chemical Biology · 12 Oct 2026 · Journal Article
PUS7-mediated pseudouridylation of 7SK enhances human somatic cell reprogramming efficiency and chromatin accessibility.
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RtmR is a membrane-embedded RRM-family RNA-binding protein
bioRxiv · 11 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.07.10.664275
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Queuosine glycosylation occurs after anticodon loop methylations and protects against stress-induced tRNA fragmentation
bioRxiv · 10 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.06.28.735034
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DNA Methylation Signatures in Breast Cancer: A Systematic Review and Meta-Analysis
bioRxiv · 8 Oct 2026 · Preprint
A meta-analysis of 144 breast cancer samples reveals a common DNA methylation pattern across all subtypes, notably involving immune system and cell cycle deregulation.
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https://jclub.com.au/a/10.1101/2022.10.15.512358
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Loss of age-associated increase in m6A-modified RNA contributes to GABAergic dysregulation in Alzheimer's disease
bioRxiv · 7 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.05.02.651974
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Genome-wide landscape of m6A regulatory genes in Marchantia polymorpha: conservation, diversification, and expression dynamics
bioRxiv · 7 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.29.755302
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Initiation codon context governs translation-coupled mRNA decay and coordinated expression in the human parasite Leishmania
bioRxiv · 6 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.07.01.735800
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Nuclear RNA cap-chaperones eIF4E and NCBP2 influence distinct mRNA fates
bioRxiv · 6 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.07.25.666897
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Unexpected ribosome turnover during prolonged translation inhibition
bioRxiv · 5 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.05.06.723260
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Nascent transcript O-MAP reveals the molecular architecture of an RBM20-regulated single-locus subnuclear compartment organized around the TTN RNA
bioRxiv · 5 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2024.11.05.622011
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A generative language model decodes contextual constraints on codon choice for mRNA design
bioRxiv · 5 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.05.13.653614
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A conserved archaeal protein with evolutionary links to bacterial ribosome hibernation and eukaryotic energy sensing.
EMBO Journal · 2 Oct 2026 · Journal Article
AHA, a conserved archaeal ribosome-associated protein, supports ribosome hibernation and shares evolutionary links with bacterial HPF and eukaryotic AMPKγ.
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https://jclub.com.au/a/42823509
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ALKBH5 in Cancer-Associated Fibroblasts Governs an Epitranscriptomic Axis That Drives Pancreatic Cancer Metastasis.
Cancer Research · 2 Oct 2026 · Journal Article
ALKBH5 in cancer-associated fibroblasts promotes pancreatic cancer metastasis through an epitranscriptomic signaling axis.
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https://jclub.com.au/a/42447266
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N6-methyladenosine (m6A) RNA modifications control the antiviral response to influenza A virus infection by limiting IFITM2/3 expression
bioRxiv · 2 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.10.01.755989
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RBPscan measures protein-RNA interactions in living cells.
Nature Reviews Genetics · 1 Oct 2026 · Journal Article
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https://jclub.com.au/a/42260107
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Dual cytosine modification through hydroxylation and arabinofuranosylation in phages.
Nature Chemical Biology · 1 Oct 2026 · Journal Article
Coliphage HY126 encodes a novel two-step arabinofuranosylation system that modifies cytosine with diarabinofuranosyl-5-hydroxycytosine in DNA.
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https://jclub.com.au/a/41922540
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M(6)A modification in lipid metabolism and related diseases.
Frontiers in Genetics · 1 Oct 2026 · Review
m 6 A modification plays a significant role in lipid metabolism and related diseases, with regulators like METTL3 and METTL14 involved in disease development and progression.
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https://jclub.com.au/a/42889010
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Blocking the m(6)Am methyltransferase PCIF1 in macrophages attenuates colitis progression by preventing neuronal damage.
Cellular & molecular immunology · 1 Oct 2026 · Journal Article
Blocking the m(6)Am methyltransferase PCIF1 in macrophages reduces colitis progression and protects enteric neurons from inflammation-driven degeneration.
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https://jclub.com.au/a/42613369
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Diet-Induced Phospholipid Remodeling Dictates Ferroptosis Sensitivity and Tumorigenesis in the Pancreas.
Cancer Discovery · 1 Oct 2026 · Journal Article
Diets high in oleic acid (MUFA) markedly enhance pancreatic tumorigenesis, while polyunsaturated fatty acids (PUFA) suppress tumor progression in a mouse model.
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https://jclub.com.au/a/42053430
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Accurate isoform quantification in bulk and single-cell RNA-seq by integrating multi-platform sequencing data and sequence-to-expression models
bioRxiv · 30 Sept 2026 · Preprint
Multi-platform sequencing integration with MPAQT achieves state-of-the-art isoform quantification, validated by simulations and experimental benchmarks.
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https://jclub.com.au/a/10.1101/2024.07.11.603067
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The cellular landscape of druggable RNA-binding proteins.
Nature Reviews Drug Discovery · 29 Sept 2026 · Review
Cell surface RNA-binding proteins are identified with disease-specific and cell-type specificities, offering new avenues for immunotherapy and biomarker development.
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Incorporating FDR into the assessment of nanopore sequencing for the reliable detection of DNA modifications in real applications
bioRxiv · 29 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2024.11.19.624260
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Base modification analysis in long read sequencing data using Minimod
bioRxiv · 28 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.07.16.665072
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