Genetic Mapping and Diversity in Plants and Animals

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Adjusting for medication status in genome-wide association studies
medRxiv · 22 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2024.02.19.24303028
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Identification of QTL for yield potential under heat stress conditions through a tomato MAGIC population
bioRxiv · 22 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.01.23.634636
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Uncovering the genetic basis of agronomic traits in over 1,000 grapevine genotypes derived from a disease resistance breeding program
bioRxiv · 22 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.10.05.680539
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Leveraging the joint site frequency spectrum to detect genomic regions of early divergence
bioRxiv · 21 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.03.03.709333
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Multiancestry conditional and joint analysis applied to GWAS summary statistics.
Nature Genetics · 20 Oct 2026 · Journal Article
Manc-COJO enhances detection of independent associations in multiancestry GWAS, outperforming GCTA-COJO with over 120-fold faster processing and improved accuracy.
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Imputation of fluid intelligence to increase power for gene discovery.
Nature Genetics · 20 Oct 2026 · Journal Article
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https://jclub.com.au/a/42901986
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Sequential accumulation of adaptive alleles forms an inversion supergene in deer mice
bioRxiv · 20 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.23.753864
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Haplotype-rich cis-regulation underlies transcriptomic diversity across the breeding history of maize (Zea mays)
bioRxiv · 19 Oct 2026 · Preprint
Haplotype-rich cis-regulatory variation explains a significant portion of transcriptomic diversity in maize, with 77.7% of fine-mapped eGenes showing multiple credible sets.
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https://jclub.com.au/a/10.64898/2026.02.19.706772
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Increased grain weight conferred by GW2 mutations in wheat does not translate into yield gains in multi-year field trials of near-isogenic lines.
Journal of Experimental Botany · 16 Oct 2026 · Journal Article
Mutations in TaGW2 increase grain weight by up to 20% in wheat but do not improve overall yield in multi-year field trials.
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https://jclub.com.au/a/42388144
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Complex genetic architecture underlying the plasticity of tobacco leaf width provides insight into across-environment genomic prediction.
Journal of Experimental Botany · 16 Oct 2026 · Journal Article
Genetic loci associated with tobacco leaf width mean and plasticity show environment-dependent effects, with 14 LWm and 43 LWp loci identified in a MAGIC population.
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https://jclub.com.au/a/42445951
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EXPANSIN A6 and GRAIN WIDTH 2 genes differentially affect grain weight, grain number, and yield of wheat through their physiological determinants.
Journal of Experimental Botany · 16 Oct 2026 · Journal Article
Overexpression of EXPANSIN A6 in wheat increases grain weight and yields, while GRAIN WIDTH 2 knockout enhances grain weight but reduces overall yield in field conditions.
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https://jclub.com.au/a/42560373
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WISER: spectral whitening of fixed effects for improved breeding value estimation in structured, unbalanced, and genotype-environment-confounded populations
bioRxiv · 15 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.07.17.665325
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Range-wide population genetics reveals how disjunctions, admixture, and translocations influence conservation of Physaria globosa (Brassicaceae)
bioRxiv · 14 Oct 2026 · Preprint
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Alus harbor genetic variants that shape the human cortex.
Nature Neuroscience · 12 Oct 2026 · Journal Article
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https://jclub.com.au/a/42864447
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Maize genetic diversity is largely unstructured by human ethnolinguistic diversity in its center of origin
bioRxiv · 8 Oct 2026 · Preprint
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Selection maintains genetic coupling of functional trait trade-offs despite gene flow in an oak hybrid zone.
bioRxiv · 6 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.05.18.725696
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Ghd7‑triggered transcriptional regulation for synergistically improving rice eating quality and yield.
Nature Communications · 5 Oct 2026 · Journal Article
Ghd7‑triggered transcriptional regulation involving PCF3‑T enhances both rice yield and eating quality by balancing starch and protein content.
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https://jclub.com.au/a/42844268
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Imputation of fluid intelligence scores reduces ascertainment bias and increases power for analyses of common and rare variants.
Nature Genetics · 5 Oct 2026 · Journal Article
Imputation of fluid intelligence scores increases genetic associations from 390 to 550 and identifies 26 neurodevelopmental genes, including 8 novel candidates.
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https://jclub.com.au/a/42834203
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The PvAURK-PvGRFs regulatory module controls salt tolerance in common bean (Phaseolus vulgaris L.).
Plant Physiology and Biochemistry · 4 Oct 2026 · Journal Article
PvAURK-PvGRF regulatory module is linked to enhanced salt tolerance in common bean, with Hap2 of PvAURK showing the strongest association.
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https://jclub.com.au/a/42837978
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Significance filtering induces denominator selection bias in local genetic correlation: closed-form characterisation, a gate-aware correction, and an applicability diagnostic
bioRxiv · 3 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.28.755121
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GWAS of flag leaf primary metabolites uncovers metabolic QTL hubs linked to grain yield stability under drought in field-grown indica rice
bioRxiv · 2 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.28.754946
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Genomic Consequences of Altered Flood Regimes: Gene Flow and Adaptation in a Threatened Floodplain Plant
bioRxiv · 2 Oct 2026 · Preprint
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Translating functional molecular knowledge into crop-breeding success.
Nature Reviews Genetics · 1 Oct 2026 · Review
Sequence-based deep learning predicts genetic variant effects at base-pair resolution to enhance crop breeding strategies.
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https://jclub.com.au/a/42162322
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Overcoming hybrid sterility in rice.
Nature Genetics · 1 Oct 2026 · Journal Article
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https://jclub.com.au/a/42850407
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A pilot genome-wide association study of ischemic heart disease with co-occurring arterial hypertension in a Kazakh cohort.
Frontiers in Genetics · 1 Oct 2026 · Journal Article
A pilot GWAS of ischemic heart disease with hypertension in Kazakh individuals identified ZFHX3 as the strongest suggestive locus but found no variants reaching genome-wide significance.
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https://jclub.com.au/a/42889095
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A novel matrix multiplication framework for modeling genotype-by-environment interaction in genomic prediction.
Frontiers in Genetics · 29 Sept 2026 · Journal Article
Matrix-product-based kernels improve genomic prediction of genotype-by-environment interactions, with up to 13.2% higher predictive accuracy than Hadamard kernels in wheat and rice datasets.
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https://jclub.com.au/a/42871836
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Neural Processes with Normalizing Flows for Wheat Height Estimation
bioRxiv · 28 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.06.24.734247
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A TWAS method calibrated for the uncertainty of predicted expression
bioRxiv · 25 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2022.11.06.515378
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Learning Environment-Associated Marker Rankings with Attention-Based Graph Neural Networks
bioRxiv · 25 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.21.753280
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BSA101: Unlocking Historical Mutant Collections with BSA-Seq
bioRxiv · 25 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.24.754120
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