Genetic diversity and population structure

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Recent rapid radiation of apex predators suggests dramatic biodiversity turnover in an ancient lake
bioRxiv · 22 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.01.14.633002
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Mutation choice biases the structure of empirical fitness landscapes
bioRxiv · 22 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.28.754994
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Leveraging the joint site frequency spectrum to detect genomic regions of early divergence
bioRxiv · 21 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.03.03.709333
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Dynamics of genotype frequencies in finite partially clonal populations under mutation and genetic drift
bioRxiv · 21 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.04.10.717696
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Phylogeography of clinical Burkholderia pseudomallei isolates in Cambodia demonstrates diversity, broad dispersal, and novel genes.
mSystems · 21 Oct 2026 · Journal Article
Genomic analysis of 253 Cambodian Burkholderia pseudomallei isolates reveals high diversity, 11 distinct clades, and a unique gene-containing genomic island.
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https://jclub.com.au/a/42904687
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Robustness of Ancestral Recombination Graph Inference Tools to Phasing Errors
bioRxiv · 20 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.11.24.690249
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MSCquartets 3.3: Fast Inference of Species Networks and Trees of Blobs under the Multispecies Coalescent.
Bioinformatics · 20 Oct 2026 · Journal Article
MSCquartets 3.3 enables rapid inference of species networks and trees of blobs under the multispecies coalescent, with improved computational speed and new algorithms.
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https://jclub.com.au/a/42902789
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Genomic variation and ancestry of Helicobacter pylori in the admixed population of Cabo Verde reveal host adaptation, limited host-pathogen ancestry concordance, and signatures of trans-Atlantic slave trade migrations
bioRxiv · 16 Oct 2026 · Preprint
Cabo Verdean Helicobacter pylori show European and West African ancestry with limited host-pathogen ancestry concordance, reflecting complex migration and adaptation patterns.
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https://jclub.com.au/a/10.64898/2026.06.05.730320
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Population structure and aquatic environment shape kin discrimination in toad tadpoles
bioRxiv · 16 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.08.07.669028
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Not all roads lead to selfing: mating-system stability in an invasive ectomycorrhizal fungus
bioRxiv · 16 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.19.752884
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Global patterns of natural selection inferred using ancient DNA
bioRxiv · 16 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.01.07.697984
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Phylogenetic estimation of diversity-dependent biogeographic rates using deep learning
bioRxiv · 15 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.02.17.706216
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Deciphering genomic adaptations and climate resilience in the intertidal seagrass Zostera japonica.
Cell Reports · 15 Oct 2026 · Journal Article
Genomic analysis reveals TIP3-1 gene in Zostera japonica confers tolerance to salinity and heat, highlighting key adaptation mechanisms in intertidal seagrass.
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https://jclub.com.au/a/42879283
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Range-wide population genetics reveals how disjunctions, admixture, and translocations influence conservation of Physaria globosa (Brassicaceae)
bioRxiv · 14 Oct 2026 · Preprint
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Pangenome analyses uncover the scale and evolutionary consequences of structural variation in a wild mammal
bioRxiv · 13 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.01.27.701785
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Integration of publicly available datasets reveals pesticide-associated genetic variation in a wild non-target animal
bioRxiv · 8 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.08.20.671246
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Maize genetic diversity is largely unstructured by human ethnolinguistic diversity in its center of origin
bioRxiv · 8 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.02.02.703385
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D-plus: Beyond the D-statistic -- Accurate Detection and Characterization of Introgression Despite Among-Lineage Rate Variation
bioRxiv · 8 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.10.01.755911
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Improving the Resolution and Informativity of the Majority-Rule Consensus Tree Using Fine-Grained Dissimilarity Measures
bioRxiv · 8 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.03.16.712085
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Recomb-Mix Cloud: a cost-efficient and scalable cloud-friendly pipeline for local ancestry inference
bioRxiv · 7 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.28.755192
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Forensic likelihood ratios for shotgun sequencing data from DNA mixtures
bioRxiv · 6 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.28.755155
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Conserved transcriptional plasticity, not local adaptation, dominates early climate responses across wild and cultivated apples
bioRxiv · 6 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.01.15.698562
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Selection maintains genetic coupling of functional trait trade-offs despite gene flow in an oak hybrid zone.
bioRxiv · 6 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.05.18.725696
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From mountaintops to metacollections: using genomics to evaluate ex situ conservation collections. A case study from tropical montane cloud forest plants in Australia
bioRxiv · 5 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.06.27.734930
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Phylogenomics and museomics reveal five distinct species of tiger cats in South America.
Current Biology · 5 Oct 2026 · Journal Article
Genomic analyses reveal five distinct tiger cat species in South America, including a newly described species and subspecies, clarifying their taxonomy and evolution.
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https://jclub.com.au/a/42753727
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Tracking two decades of global dengue virus lineage dynamics
bioRxiv · 4 Oct 2026 · Preprint
Global dengue virus lineages show regional differences in diversity, with five cosmopolitan lineages detected in at least seven of nine regions.
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https://jclub.com.au/a/10.64898/2026.10.02.756263
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Paleogenomic time series reveal past population dynamics and their relevance for the conservation of the Alpine ibex
bioRxiv · 2 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.28.755134
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Anthropogenic-driven loss of an adaptive radiation reduces thermal response diversity
bioRxiv · 2 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.07.07.736981
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Forensic characteristics and genetic variations of Han Chinese population in Shenzhen revealed by 23 autosomal STRs.
Frontiers in Genetics · 2 Oct 2026 · Journal Article
The 23 autosomal STR loci show high polymorphism and a cumulative power of exclusion of 0.9999957 in the Shenzhen Han population.
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https://jclub.com.au/a/42890567
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Connectivity, genetic diversity and adaptive potential of an endangered beetle: genomic evidence for veteran tree management
bioRxiv · 2 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.28.755044
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