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Protist diversity and phylogeny

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Moved, week to 23 Oct 2026: 1
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Comparative analysis of mitochondrial proteomes across the tree of life.
Cell · 1 Oct 2026 · Comparative Study
Comparative analysis reveals 8,619 mitochondrial proteins across eight species, uncovering conserved families and potential drug targets in eukaryotic pathogens.
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An experimentally tractable framework for quantitative and integrative analysis of aggregation in the origin of animals
bioRxiv · 21 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.05.14.653760
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REMAG: recovery of eukaryotic genomes from metagenomic data using non-contrastive self-supervised learning
bioRxiv · 13 Oct 2026 · Preprint
REMAG recovers more near-complete eukaryotic genomes than existing tools in metagenomic data, outperforming current methods in simulated and real datasets.
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https://jclub.com.au/a/10.64898/2026.03.05.709928
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Host-to-symbiont transfer of fatty-acid-derived carbon in the Paramecium bursaria-Chlorella variabilis photosymbiosis
bioRxiv · 6 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.11.27.690892
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Evolutionary patterns and repeated adaptive strategies of deep-sea anemones.
Current Biology · 5 Oct 2026 · Journal Article
Deep-sea anemones show repeated dismantling of circadian and meiotic genes, indicating convergent genomic erosion across multiple lineages at depths of 432 to 6,000 meters.
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Thermococcales pangenome uncovers new genera and modular evolution.
bioRxiv · 2 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.28.752058
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Accurate ab initio gene prediction in eukaryotes with Tiberius in multiple clades
bioRxiv · 1 Oct 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.04.24.720536
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Land-use categories shape aquatic conidial fungal communities in Atlantic Forest streams: the roles of water chemistry and substrate quality.
Fungal Biology · 1 Oct 2026 · Journal Article
Land use significantly influences aquatic conidial fungal community composition, with higher diversity and occurrence in forested areas compared to rural and urban zones.
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https://jclub.com.au/a/42668150
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ITS-based metabarcoding of broiler and layer chicken litter: Linking fungal diversity to environmental and One Health risks.
Fungal Biology · 1 Oct 2026 · Journal Article
Dual-marker ITS sequencing reveals distinct fungal communities and clinically relevant genera in poultry farm environments, with ITS1 showing higher richness than ITS2.
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Beyond AMGs: Phage-encoded transcription and sigma factors as understudied virocell reprogramming tools.
Trends in Microbiology · 1 Oct 2026 · Review
Phage-encoded host-acting transcription and sigma factors (TSFs) are prevalent in phages and may significantly influence host cellular functions beyond traditional AMGs.
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Ancestral secretory programs underlie the evolution of morphological innovations across Spiralia
bioRxiv · 30 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.03.09.710468
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Outer Membrane Vesicles from bacteria expressing the HlyF/CprA family of enzymes are more efficient at delivering their cargo into host cells.
bioRxiv · 30 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.03.27.645671
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Breaking the species barrier: recurrent genomic introgressions from very distant lineages in a ciliate
bioRxiv · 30 Sept 2026 · Preprint
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Dynamic protrusions mediate crawling motility in Asgard archaea.
Nature · 30 Sept 2026 · Journal Article
Asgard archaea exhibit dynamic actin-based protrusions enabling crawling motility, with speeds up to 4.8 µm per minute, resembling eukaryotic cell movement.
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How opsins diversified after the teleost whole-genome duplication: Insights from two parietopsins of the red piranha, Pygocentrus nattereri
bioRxiv · 25 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.09.17.675483
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The Gti1/Pac2 family protein CFG1 controls fungal chlamydospore formation through orchestrating cell wall remodeling, lipid metabolism, and ribosome biogenesis.
Applied and environmental microbiology · 23 Sept 2026 · Journal Article
CFG1, a Gti1/Pac2 family protein, is essential for chlamydospore formation in Trichoderma guizhouense, regulating lipid metabolism and cell wall remodeling.
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Vesicle-associated exudates from Alteromonas enhance growth and survival of Prochlorococcus in batch culture.
Applied and environmental microbiology · 23 Sept 2026 · Journal Article
Alteromonas macleodii EZ55 exudates, including vesicles, significantly enhance Prochlorococcus MIT9312 growth and survival, with effects observed across all growth phases.
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Low determinism in community assembly of transient and resident pelagic fungi across climate zones in Scandinavian lakes.
mSystems · 22 Sept 2026 · Journal Article
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Comparing DNA Extraction Protocols for Freshwater Prokaryotic Communities: Impacts on Yield and Microbial Profiling
bioRxiv · 11 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.01.21.699709
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High throughput in situ imaging reveals complex ecological behaviour of giant marine mixotrophic protists
bioRxiv · 10 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.08.12.669610
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Associative learning in the protozoan Stentor coeruleus
bioRxiv · 10 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.02.25.708045
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Herbicide metolachlor alters gene expression and reshapes the interaction between a bloom-forming cyanobacterium and its chytrid parasite
bioRxiv · 9 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.10.07.680865
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Distinct cell states define larval and adult body plans in a hemichordate.
Nature Communications · 8 Sept 2026 · Journal Article
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https://jclub.com.au/a/42711331
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RNA structure conservation in plastids across plant evolution
bioRxiv · 4 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.08.06.668526
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Depth-dependent eDNA abundances across ecosystems inform deep-sea sampling strategies
bioRxiv · 4 Sept 2026 · Preprint
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Chilling injury to algal symbionts induces host starvation and metabolic reorganization in a temperate cnidarian
bioRxiv · 3 Sept 2026 · Preprint
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A biochemical mechanism for Stu2/XMAP215-family microtubule polymerases.
eLife · 3 Sept 2026 · Journal Article
Stu2/XMAP215-family microtubule polymerases operate via an enzyme-like mechanism, with activity dependent on tubulin-binding TOG domains, revealing a convergent evolution in cytoskeletal regulation.
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Molecular and cellular insights into the parasitic infection of bloom-forming marine diatoms by Pirsonia diadema.
Nature Microbiology · 1 Sept 2026 · Journal Article
Pirsonia diadema infects bloom-forming Coscinodiscus diatoms through a rapid life cycle involving specialized cytoskeletal mechanisms, revealing unique genetic adaptations.
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Metabolic cues are the main drivers for the differentiation of chloroplasts into chromoplasts and other plastid types.
Journal of Experimental Botany · 1 Sept 2026 · Review
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Spatiotemporal Regulation of N(2) Fixation and Photosynthesis in Trichodesmium: New Insights From mRNA CARD-FISH and nanoSIMS.
Environmental microbiology · 1 Sept 2026 · Journal Article
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Pre-Cambrian origin of envelope-carrying retrotransposons in metazoans.
eLife · 28 Aug 2026 · Journal Article
Envelope-carrying retrotransposons in metazoans originated before the split of bilaterian and non-bilaterian animals in the Pre-Cambrian era, over 541 million years ago.
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