ABAG-Rank improves antibody-antigen complex model selection by outperforming AlphaFold3's internal scores, achieving a significant ranking performance boost.
- 1 cites
Protein Structure and Dynamics
Moving in Bioinformatics and eLife.
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AroMIP predicts membrane insertion of aromatic-centered motifs in IDPs with over 91% accuracy, revealing key sequence determinants for membrane association.
- Open access
- 2 cites
NCFlow enables the placement of any non-canonical amino acid into proteins, outperforming existing methods in structure prediction for unseen ncAAs.
- 9 cites
Latest in Protein Structure and Dynamics
Newest first · last 60 days
RigidSSL pretraining enhances protein designability by up to 43% and improves conformational ensemble modeling in G protein-coupled receptors.
- Open access
ProVADA enables functional protein redesign, converting human renin into an active cytosolic protease and deimmunizing murine antibodies with significant HLA-I binder reduction.
- Open access
Optimized power exponents for distance-based variables improve protein-ligand binding affinity prediction, with neural network models reaching R values between 0.800 and 0.900.
- Open access
LoL-align is significantly more sensitive than TM-align and Dali in detecting remote homologs, with 5-20 times faster alignment speed on benchmark datasets.
- Open access
HDOCK-Multimer (HDM) significantly outperforms existing methods in predicting large protein complex structures across multiple benchmarks.
- Open access
Human glutamine synthetase forms product-stabilized filaments that reduce catalytic specificity at physiological glutamine levels.
- Open access
Deep-learning co-folding methods accurately predicted over 50% of Mac1 ligand poses within 2 Å RMSD for 489 SARS-CoV-2 complexes, despite limited structural rearrangement recapitulation.
- Open access
Incorporating desolvation effects into coarse-grained models reveals that desolvation energetics significantly influence the thermodynamics and kinetics of biomolecular liquid-liquid phase separation.
- Open access
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Topics moving, week to 23 Oct 2026
- Single-cell and spatial transcriptomics6
- Neuroinflammation and Neurodegeneration Mechanisms5
- Bacteriophages and microbial interactions5
- Gut microbiota and health5
- Genomics and Phylogenetic Studies4
- Cancer Genomics and Diagnostics4
- Cancer Immunotherapy and Biomarkers4
- Alzheimer's disease research and treatments3
- Inflammatory Bowel Disease3
- Influenza Virus Research Studies3